I am a computatonal researcher at Genentech, Inc. working with Christian Hammer. I closely work with fellows in the department of Human Genetics and the department of Cancer Immunology. Earlier, I completed my Ph.D. under supervision of Dr. Alexis Battle in the Department of Computer Science at Johns Hopkins University, USA.
As a computational biologist, I try to connect Computer Science with Biology by developing biologically-informed computational methods. I incorporate biological insights into the computational models so that the outcomes are interpretable. In my current research, I investigate the roles of genetic variants in the development and evolution of tumors in order to identify and enhance understanding of novel therapeutic targets and biomarkers. I leverage various kinds of biological data from both public consortia and clinical trials in cancer immunology.
I primarily use R for my research. I also use Python, Matlab and C/C++ whenever required. I care about efficient coding and reproducible research.
PhD in Computer Science, 2021
Johns Hopkins University, USA
MSc in Computer Engineering, 2013
Korea University, South Korea
BSc in Computer Science and Engineering, 2007
Bangladesh University of Engineering and Technology, Bangladesh
I analyze biological data and apply statistical and machine learning methods in order to identify and enhance understanding of novel therapeutic targets and biomarkers. Here, my responsibilities include:
At the Battle Lab, I worked to develop and use computational methods to understand, analyze and interpret gene regulation in humans. Here, my responsibilities included:
At DMIS lab, my responsibility was to
Badhan has been a defining chapter for me. I have been an active volunteer for the organization since 2002. I served Badhan in different capacities including as the President of Badhan, Buet Zone in 2005. I am now a central adviser of the organization. So far I donated blood ~30 times (lost counting). The above photo was taken while donating platelets in 2010.
I’m a hobbyist photographer. Birds and wild animals especially attract me. You are welcome to visit my 500px profile to see a few of my photographs.
I love traveling. My target is to visit every state and every national park in USA. So far I visited 31 states and 12 national parks. The pins in the above map show the states (blue pins) and national parks (red pins) I visited until September 2018.
A water-color painting by my lovely wife.
From one of my most favorite hikes at the Old Rag Mountain, VA.
Reading books is one of my favorite leisure activities. The above picture shows some of my favorite popular science books I read in 2019. You are welcome to visit my goodreads profile.